DNA N6-Adenine Methylation in Arabidopsis thaliana

Publication date: Available online 12 April 2018
Source:Developmental Cell
Author(s): Zhe Liang, Lisha Shen, Xuean Cui, Shengjie Bao, Yuke Geng, Guoliang Yu, Fan Liang, Shang Xie, Tiegang Lu, Xiaofeng Gu, Hao Yu
DNA methylation on N⁶-adenine (6mA) has recently been found to be a potentially epigenetic mark in several unicellular and multicellular eukaryotes. However, its distribution patterns and potential functions in land plants, which are primary producers for most ecosystems, remain largely unknown. Here we report global profiling of 6mA sites at single-nucleotide resolution in the genome of Arabidopsis thaliana at different developmental stages using single-molecule real-time sequencing. 6mA sites are widely distributed across the Arabidopsis genome and enriched over the pericentromeric heterochromatin regions. 6mA occurs more frequently in gene bodies than intergenic regions. Analysis of 6mA methylomes and RNA sequencing data demonstrates that 6mA frequency positively correlates with the gene expression level and the transition from vegetative to reproductive growth in Arabidopsis. Our results uncover 6mA as a DNA mark associated with actively expressed genes in Arabidopsis, suggesting that 6mA serves as a hitherto unknown epigenetic mark in land plants.

Graphical abstract

Teaser

Characterization of DNA methylation in plants has until now focused mainly on 5-methylcytosine (5mC), which is associated with gene repression. Liang et al. now reveal that methylation on N⁶-adenine (6mA) is a dynamic DNA modification that is enriched on gene bodies and associated with actively expressed genes in Arabidopsis.


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